rs30160055 SNP Detail

Summary

• ID
  rs30160055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153429627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTGGGGATA TAGCCCTGTG ACCAGACAGG ACCTTGGCAT TTGTAAAAGT CCAATCAGCA
  GCACCACTCC AGAGCAAGCA CACTCACACA GACAGAAGAT GCATGACAGG GGAAAAACCA
  ATAGAGGAAG ACATGACCAA CAACAGGACA TGGCAGGCGC CTTGATTTCC TTTTAGCAAA
  TGACACAAAT AAATAGAGAC GATGTGGTGA CCTAGTTCCA GTTCCTGTGA GTTCAAGTTG
  CATTCTGTGA TACCAATGGA TTATTTCCTC CTAACTTTGC CACCCTTGGG GAAAAAAAAA
  R
  AAAAGAAAAG GCGTGGAAAG TGTTCCAAAA CAAACGGCAA GCTCAGGAAA GTCACAATAA
  GGGTCTGCTG CCTCGCTTCA TGAGAGGGAA GGATGACTGG TACAACTTCA ACAGCAGCCC
  AAGACTATAT TAAGTGCTAC GACACACAAG ACTGTTCTGT GTGGCCCTTG GTCACACAGC
  ACCTTCTCGG GGCTGGAAAC CGAACACCTT AGTTTTCTCT CCGGGATGGG AAACCTTCAT
  GCTGCTCAAG TTTGGATCCA CGGAGTCAGA CTGGGCAACT GAATAAGGAC AGCGAGGAAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45401341	mCV23571636	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30160055					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153429627 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			78 bp distal
Rr587740	regulatory region 587740			59 bp proximal
Rr587741	regulatory region 587741			1174 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			77 bp downstream
Tssr36240	transcription start site region 36240			1114 bp downstream