rs30159426 SNP Detail

Summary

• ID
  rs30159426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:53155177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACATACAGAG GCTCATATGT TGGGACACGC ATTCTTAGAA GGCATGCTGT TTTGAGAGGT
  TAAGTGACCT TCTGGCTAGC TAGCATGGGG TAGGTTGCTG AAGGCAACCT TTTGAAGGTA
  CAGCCCTATA CACTAGTTCT AGTTTGACTC TCTTGCCTTC CTGTTCTGTC CCCCTTGAGG
  GCCTTTGCCT TAGGCTCACT ATGACAAAGA ACTGCTCAGC CACACCTCCT CCATCCAATG
  GACTAAAAGC CCCAGAAACC GGGAGCCCAA AGGAATCCAC CCTTCCTTAG ATTGCATCTT
  Y
  CAGAAGGTTT GTCCTAGGCA AGAAGTAGTA GCTGATACAG CACGTAGTCA CGGTTGCATA
  TACTGTGTAG GTGAATAGTC AAGTTTAAGT GTTTCTCTGC AATTAGCAGA GACACTAGCT
  TGCTTTAGTG TGGGAATCGG GATGTTATAT ATCATAAACA AAGCCAGCCG CCGAGTGTAG
  TGACATGCTG AGGAGAGCAC TTTTGAGAGA CCTGGGAAAG TCACCAGTGT CCTGGATACC
  TATCCTCGTG ATTAAAACAC AAAAAGTGGC CTAGATACAG GGCTAGCAAG CTATGGGCCA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45400380	mCV22648694	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs30159426					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53155177 () rs orientation: forward

Symbol	Name	Function Class
Lhfpl6	LHFPL tetraspan subfamily member 6	within coordinates
Rr576667	regulatory region 576667	1968 bp distal
Rr576668	regulatory region 576668	366 bp distal
Rr576669	regulatory region 576669	447 bp distal