rs30158938 SNP Detail

Summary

• ID
  rs30158938
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87664296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGC AGGGAACAAA TGACACCCTG
  K
  GGGTAGGGGG TGAAAGTCAC TTAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45400873	mCV25326072	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss135468128	ENSMUSSNP1959134	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320835374	CHEV_3_87560911	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30158938					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87664296 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13335	CpG island 13335			137 bp distal
Pear1	platelet endothelial aggregation receptor 1			Intron
				mRNA-UTR
				Splice-Site
Rr579538	regulatory region 579538			848 bp distal