rs30157437 SNP Detail

Summary

• ID
  rs30157437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58788662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAAGTGG CAGTTTCTGT
  CTTGATGGCT GCTGCACTTG GTGTTTAAAC ACTGTCATTG AAATTTTACA GGTGACATAT
  GATGAAGAGC TATGTCAAAG ACAAACATCC ACTTGTTATA ATGAATGAAA CCATGGTCTT
  GGCAGAAAAG CTAGTGACCT GTAATAAATG AACCACTGAC CCATAGATAG ATGAGAATCA
  R
  CCAAAATAAA TGAGGCAGAA GTTTTCCCAG CATAACTTTG CATCCTAACA GAGCAGGGCT
  GTGTTGTAAT TAAAAGAGAT AGAATGAATG GTCAGTAGGG AACATTTAAT AGGAACTAAC
  ATACAGCATT GCCAAACTCT TCTTCTGGTT CATTCTTTAC GTTCATGCTA TTCAATATAT
  ATAGGCTTTA AAAGTGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45401508	mCV22834697	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss135210083	ENSMUSSNP6752237	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30157437					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58788662 () rs orientation: forward

Symbol	Name	Function Class
Clrn1	clarin 1	Intron
Rr375038	regulatory region 375038	1145 bp upstream
Rr577289	regulatory region 577289	1628 bp proximal