rs30156546 SNP Detail

Summary

• ID
  rs30156546
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79382447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAATGAAA ACAGCCAGGG
  TGTCGTAAAC AAGACTCATC CAAAACGGTT TCCTCTCTAA CCTGTTGATT TGACCTGAGG
  CATTTAATAC TATGCGCTAC TTAAGTAATG ATTTCTTGTC TGATGGGACA GGCTGTTCTT
  TTGTAGTCTG GCTGGTTGGT TGCCCACATG AATTAATTAG TATTCATGAG CATGTATCAC
  W
  GCCAGGCTTT CAGCAAAGCG CCTTATCTGT GCTACTGACT CCTATGTGAT ATTTCTGGAG
  TCAATCTGTT GCTACTCTTA AAATTAAATG GAACAGGCTG CTATATCCAA CTGTTATTTA
  TAGATTAGTC TGAAAAGTGC CTGAAGCCTA GATCACTGTG ATGATGCCAA TTTTAGTCCT
  GATGACCTTA CCTAATGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45401497	mCV24555318	ABI	CRAMUS_MOUSE	f	SNP		T	A					A		A
ss47030784	NES10777816	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A		A	A	A	A	A	A	A	A	A
ss135372195	ENSMUSSNP396101	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30156546					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030784	NES10777816	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79382447 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578524	regulatory region 578524	within coordinates
Rr578525	regulatory region 578525	892 bp proximal