rs30156262 SNP Detail

Summary

• ID
  rs30156262
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27244783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTTCTT CTTTTCAGTG
  TGTCTGTGGC GAGTGCATGT GTGTATGTAC ATTCACATGT GTGTGGGCAT CCCTGTGCAG
  ATGTGTATGC GTGTATGTAT ATGTAATGTG TATAGATATG TGCATGTCAT GGCATGCATG
  TAGAGGTCAG AGGATGTCTG GCAGGACTCT GTTTTCTCCT TCCACTGTGT GAGACCTGAG
  W
  GTTGAACTCA GCAGTAGGTG TCTTAACTCA TTCAGCCATC TTACTGTTCC TAGGTCCAAA
  ATAGTCTGCC ATCAATCTTC TACCTTATTC TTTGAGGAAA GATCTCTAGA TCAAACCCAG
  AGCTCTTGGC AGCTTGGTCA GGGATGCCCT GTCCTGCCTT CCAAAGCTGA AATCACTGGC
  AGGCAACTAT GCTCCTTCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45400353	mCV27552806	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss134702617	ENSMUSSNP2026322	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30156262					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27244783 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			within coordinates
Rr574359	regulatory region 574359			1858 bp distal
Rr574360	regulatory region 574360			430 bp distal
Rr574361	regulatory region 574361			149 bp proximal
Rr574362	regulatory region 574362			1227 bp proximal
Tssr28610	transcription start site region 28610			1498 bp upstream
Tssr32839	transcription start site region 32839			1296 bp downstream
Tssr32840	transcription start site region 32840			1340 bp downstream