rs30155898 SNP Detail

Summary

• ID
  rs30155898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27245403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGGGAGA GGCACTACTG
  GGAGGTGTGC CCTTGGAGTG GGTGTGGCCA TGTTGAGTAG GTTTCCCTTT GTTGTGTATT
  ACTGTGGGTG GGCTTTGGGG TTTCAGAAGT TCAACTCAGG CCCAGAGTCA TCTCTCTTCC
  TGCTGCCTGC TGATCCAGAT ATGGAACTCT CAGCTACCTC TCCAGCACCA TGTCTGCTTG
  Y
  GTGTTGCCAT GCTTCCTACA ATGACAATAA TGGGTTAACC CTTTGAACTG TAAGCCCCAA
  TTAAATATTT TCCACTATAA GAGTTGCTGA GGTCCTGGTG TCTCTTCACA GTAATCAAAC
  AGGCATCAAC GACAAGCCAA AGAAACCATT CCGCCCAAGG GTTGCTTTGT GAACCCTTTG
  TGACCCCTAT GAGTCTAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45400934	mCV27552807	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss134702620	ENSMUSSNP780351	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30155898					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27245403 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			48 bp downstream
Rr574360	regulatory region 574360			1050 bp distal
Rr574361	regulatory region 574361			22 bp distal
Rr574362	regulatory region 574362			607 bp proximal
Tssr28610	transcription start site region 28610			878 bp upstream
Tssr32839	transcription start site region 32839			676 bp downstream
Tssr32840	transcription start site region 32840			720 bp downstream