rs30155341 SNP Detail

Summary

• ID
  rs30155341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95497832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATAAAAGGGT GTGTGCTCAG ATTTTTTTTC CCCCATTTAT GGGAATGGTA CTTAGGACCT
  TATATATGCT AAATAACACT ATGCTGTAAC TGTAACACTG AGCCATATTC TAGCCCCTTT
  TTCTTTTTCT TTTTTGAATG AATTCTTTCT TTAAAAAGAC TTATTTTAGT TCTTGCCCTC
  TTGGTCTCTT GCTCCTCCCT TGCTCTTTCC CTGCTTCCCT TCCCCTTTCT CTCCCCATTC
  CCGTCCCACC TCTCTCTCCA CGTGCTCATG ACTCCTCTAC TTCTCTACTC TCTTTCTCTG
  Y
  CTCTACTACC CTCGTAACTC CCCTCCCCAT GCCCTTAATA AACCCTATTC TATACTTAAA
  AAAAAAAAGA CATTCTATTT ATTTCATGTA TATGAGTACA CTGTCTGAAG AAGTCACACC
  AGAAGAGGGC ATCAGATCCC ATTACAGATG GTTGTCAGCC ACCATGTGAT TGCTGGGAAT
  TGAACTCAGG ACTTCTGGAA GAGCAGTCAG TGCTCTTAAC CACTGAGCCA TCTCTCCAGC
  CCTAGCCCCA TTTTCTTTTG CAAATTTGAT AATCTTTTAA CATTCTTGCT GGGCTTTTGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45401038	mCV23591886	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135512296	ENSMUSSNP6398899	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30155341					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95497832 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40097	predicted gene, 40097			1704 bp upstream
Gm42671	predicted gene 42671			within coordinates
Golph3l	golgi phosphoprotein 3-like			Intron
				Noncoding-Transcript-Variant
Rr397841	regulatory region 397841			1627 bp downstream
Rr580976	regulatory region 580976			1720 bp distal
Rr580977	regulatory region 580977			1521 bp distal
Rr580978	regulatory region 580978			1692 bp distal
Rr580979	regulatory region 580979			1282 bp distal
Rr580980	regulatory region 580980			115 bp proximal
Tssr30603	transcription start site region 30603			1568 bp downstream
Tssr30604	transcription start site region 30604			1533 bp downstream
Tssr30605	transcription start site region 30605			1512 bp downstream
Tssr30606	transcription start site region 30606			1477 bp downstream