rs30154921 SNP Detail

Summary

• ID
  rs30154921
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19682936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAT GGAGCCCTTC CGTCAACCGG
  M
  TTGCCGCTCC CTTCGATAGC TCAGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45399455	mCV24689009	ABI	CRAMUS_MOUSE	f	SNP	A	C				C		A
ss60376866	NES15884524	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		C	A	C	C		C	A	A		A
ss134669393	ENSMUSSNP734115	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						A
ss320679309	CHEV_3_19528772	CHEVERUD	SCREENING_POP	f	SNP											C				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30154921					SNP	A	C	C	C	C	C	C	A	C	C	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376866	NES15884524	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19682936 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	39 bp upstream
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	223 bp upstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	741 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	325 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	10 bp upstream
Rr574008	regulatory region 574008	106 bp distal
Rr574009	regulatory region 574009	within coordinates
Rr574010	regulatory region 574010	1452 bp proximal
Tssr32702	transcription start site region 32702	87 bp upstream