rs30154625 SNP Detail

Summary

• ID
  rs30154625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87471252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCA TGTAGAAATG TCATTGAATG
  R
  ACTTGCAGGA AAGCAGATGG CAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45399161	mCV24897517	ABI	CRAMUS_MOUSE	f	SNP	G	G					A	G
ss51577322	NES14673263	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	G		A	G	G	A		G
ss135464161	ENSMUSSNP6874532	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320834277	CHEV_3_87367867	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30154625					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577322	NES14673263	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87471252 () rs orientation: forward

Symbol	Name	Function Class
Rr579522	regulatory region 579522	1131 bp distal
Rr579523	regulatory region 579523	1365 bp distal
Rr579524	regulatory region 579524	1419 bp proximal