rs30154280 SNP Detail

Summary

• ID
  rs30154280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27283560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGGTTG CAGTGTGAAC
  AGCAAGGAAA TCGGGCTGAC TTGGGATGGG GACCTCAGAC GTGTCCAGGG AACAGTTTAT
  AGACAGTTGG ACTAAAGGGG CCCCTGGTGT TCTCATAGAC CTGTCCGACC TGCAGCTAGC
  CCATGGGTTA CATCTGTCCC AGGATAGTTG TGAATGCACT CAAATGTGTT TCTAGATGAC
  Y
  GCATTGTTTC TCAATGTCAA ACAGTTGGGC ACCTCTTAAA GCACTGAGCA GGTAAGTCTG
  CGTGAGTAGT GCTGTGACCA AATGACAAAT TATTCAGTGC ACACTTACTG TGGACAGTAA
  TTATGAGATA AGGGGGTTCG AGCCCAGGCT AGCCACAGAA AGCCTTATAT CCTATAGCTA
  AAGGCTAGCC AGCATCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45401025	mCV22997012	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss60380259	NES15882853	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	T		T	C	C	C	T	C	C	T	C
ss134703056	ENSMUSSNP6799811	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30154280					SNP	C	T	T	C	C	T	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380259	NES15882853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27283560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574372	regulatory region 574372			205 bp distal
Rr574373	regulatory region 574373			309 bp distal
Rr574374	regulatory region 574374			286 bp distal