rs30153858 SNP Detail

Summary

• ID
  rs30153858
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124380994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT GGGTGTGATT GGTAAATCAT
  R
  TTTCAAGAGT ATTACAAGCA TTTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45400611	mCV24044407	ABI	CRAMUS_MOUSE	f	SNP		A					G		G
ss46936749	NES10663315	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		A	G	G	G		A	G	G	A		G
ss135790732	ENSMUSSNP684628	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss320929398	CHEV_3_124290263	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30153858					SNP	G	A	G	A	G	A	G	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46936749	NES10663315	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124380994 () rs orientation: forward

Symbol	Name	Function Class
Gm9379	predicted gene 9379	1183 bp downstream
Rr584593	regulatory region 584593	1377 bp distal
Rr584594	regulatory region 584594	270 bp proximal
Rr584595	regulatory region 584595	382 bp proximal