rs30151671 SNP Detail

Summary

• ID
  rs30151671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101956100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT GGAAAGGAAA AAAATAGCTA
  Y
  GGGAGGCAGA TCTTTCTTAT TTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45399136	mCV22748693	ABI	CRAMUS_MOUSE	f	SNP		T			C		C
ss51588917	NES14670340	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C		T	C	T	T		C	C	C	C		C
ss135552955	ENSMUSSNP2670606	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss320854067	CHEV_3_101852707	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30151671					SNP	T	T	T	C	C	T	C	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51588917	NES14670340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101956100 () rs orientation: forward

Symbol	Name	Function Class
Rr375477	regulatory region 375477	269 bp upstream
Rr407227	regulatory region 407227	53 bp proximal
Rr582166	regulatory region 582166	408 bp proximal