rs30150249 SNP Detail

Summary

• ID
  rs30150249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9069763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCG AGGCTGCACA AGCAGCTACG
  R
  GTGGCGTTTG CTCTTCAACC CCAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45399502	mCV25451726	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss134571156	ENSMUSSNP3584178	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30150249					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9069763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12969	CpG island 12969	within coordinates
Rr374475	regulatory region 374475	within coordinates
Rr573365	regulatory region 573365	1357 bp distal
Rr573366	regulatory region 573366	275 bp distal
Rr573367	regulatory region 573367	within coordinates
Rr573368	regulatory region 573368	856 bp proximal
Tpd52	tumor protein D52	mRNA-UTR
Tssr32570	transcription start site region 32570	847 bp upstream
Tssr32571	transcription start site region 32571	275 bp upstream
Tssr32572	transcription start site region 32572	236 bp upstream
Tssr32573	transcription start site region 32573	188 bp upstream
Tssr32574	transcription start site region 32574	68 bp upstream
Tssr32575	transcription start site region 32575	within coordinates
Tssr32576	transcription start site region 32576	57 bp downstream