rs30149424 SNP Detail

Summary

• ID
  rs30149424
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95906069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTC CTTTTCTGGT TTCAAGGACA
  W
  TCACACCAGC ATGTGCACAC ATACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45399297	mCV25062210	ABI	CRAMUS_MOUSE	f	SNP	T		T	A	A
ss135513461	ENSMUSSNP455782	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		A
ss320841344	CHEV_3_95802680	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30149424					SNP	T	T	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95906069 () rs orientation: forward

Symbol	Name	Function Class
Gm65578	predicted gene, 65578	1427 bp upstream
Rr581117	regulatory region 581117	937 bp distal
Rr581118	regulatory region 581118	600 bp proximal
Tssr34586	transcription start site region 34586	1424 bp upstream
Vps45	vacuolar protein sorting 45	1075 bp downstream