rs30149135 SNP Detail

Summary

• ID
  rs30149135
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142405163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC AAGCATCTGC ATGTCTGTAT
  S
  TCTTGGCATT CTAGAGGCTG AAGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45399486	mCV23529627	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss136016808	ENSMUSSNP4429132	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30149135					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142405163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13889	CpG island 13889	1070 bp proximal
Gm15540	predicted gene 15540	within coordinates
Kyat3	kynurenine aminotransferase 3	1617 bp upstream
Rr398089	regulatory region 398089	1396 bp upstream
Rr586467	regulatory region 586467	1159 bp proximal
Rr586468	regulatory region 586468	1689 bp proximal
Rr586469	regulatory region 586469	1713 bp proximal
Tssr32246	transcription start site region 32246	1624 bp upstream
Tssr32247	transcription start site region 32247	1642 bp upstream
Tssr32248	transcription start site region 32248	1665 bp upstream