rs30141313 SNP Detail

Summary

• ID
  rs30141313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65288301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACCAGCA CAGAAACAGC
  TCTACTCCTT GTAAATATCT TTAAAGTTAA AAATAGAGTC ATATGTTCCT CTTAAGTTTA
  CAAGCAGAAA CTAGATATTA GTAATATTTC CCTTTACAGA AAGTTCTTGG GTGTGGTGAA
  CGGCAAATAG GAATATGAAA TCAGTGATCA TAGTGCTGCA CTTTGCAAAC TGTGAAGTCA
  Y
  TGCATACAAA ATCAGAATCT GTACATAATG AGTGGGGAAA AGACATGGGG GGGTGGGGGT
  TATGACCACA CAACATGAGG CTACTCTTTG CTAGACCCCC CCAAAAATGT ATGTGATCAG
  CACTTCACAA TTAAAAGGAA CCTTGAGCAA ACGGGGCTAA GTTTATTAAA GTCCTCATGG
  AAAAATGCTG ACAACCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49602593	NES12889724	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30141313					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602593	NES12889724	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65288301 () rs orientation: forward

Symbol	Name	Function Class
Rr577674	regulatory region 577674	439 bp distal
Rr577675	regulatory region 577675	529 bp distal
Ssr3	signal sequence receptor, gamma	mRNA-UTR
Tssr33458	transcription start site region 33458	559 bp upstream
Tssr33459	transcription start site region 33459	87 bp upstream
Tssr33460	transcription start site region 33460	51 bp downstream
Tssr33461	transcription start site region 33461	160 bp downstream
Tssr33462	transcription start site region 33462	396 bp downstream
Tssr33463	transcription start site region 33463	516 bp downstream