rs30141311 SNP Detail

Summary

• ID
  rs30141311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65288776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAACCAACAT GGCAGGGTCA AGCTGACCTC CCGGCCACCC
  AGGGCCAAAG CCATACAGCT GAACAGTGTG TGCTTTGGCC TCACAGGCCA ACACTCATAG
  R
  CCTGGGTACT ATTTTTAGGT AACTACCTTG GCTGCCTTTC TTTTAAAAAA AAAAAAAAAA
  AGATTCTGCA AGTTTCCCTC CCTCAAATTG GAGAGGCCCT G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49602591	NES12889727	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	A		G	G	G	G
ss135250822	ENSMUSSNP6514524	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30141311					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602591	NES12889727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65288776 () rs orientation: forward

Symbol	Name	Function Class
Rr577674	regulatory region 577674	914 bp distal
Rr577675	regulatory region 577675	1004 bp distal
Ssr3	signal sequence receptor, gamma	mRNA-UTR
Tssr33458	transcription start site region 33458	1034 bp upstream
Tssr33459	transcription start site region 33459	562 bp upstream
Tssr33460	transcription start site region 33460	407 bp upstream
Tssr33461	transcription start site region 33461	298 bp upstream
Tssr33462	transcription start site region 33462	66 bp upstream
Tssr33463	transcription start site region 33463	41 bp downstream