rs30141308 SNP Detail

Summary

• ID
  rs30141308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65289458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATACAAAGG CAGAGGGCCA AGCTACATGG TCTATTTGGA
  GCCAGTAGAC AAGAGGGCGA TGAGTCCAGA TGAAGCACTT ATGGACAAAA TGTAGTTTCT
  R
  TAAGATTTAA TGTTAAGGAA AAAAAATGAG ACCCCCTAAA TTAGGTTTTT AACAATAAGA
  CTTTTCCTTA TTGACACAAA TATGTAGATG TAGTTGGACT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49602588	NES12889730	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30141308					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602588	NES12889730	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65289458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr577674	regulatory region 577674			1596 bp distal
Rr577675	regulatory region 577675			1686 bp distal
Ssr3	signal sequence receptor, gamma			Intron
				mRNA-UTR
				Splice-Site
Tssr33458	transcription start site region 33458			1716 bp upstream
Tssr33459	transcription start site region 33459			1244 bp upstream
Tssr33460	transcription start site region 33460			1089 bp upstream
Tssr33461	transcription start site region 33461			980 bp upstream
Tssr33462	transcription start site region 33462			748 bp upstream
Tssr33463	transcription start site region 33463			637 bp upstream