rs30141307 SNP Detail

Summary

• ID
  rs30141307
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65289722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTATTG ACACAAATAT
  GTAGATGTAG TTGGACTGTC AGTAAACACA ATCTACAGCA TGGGAGGCTA TAAACATGAC
  AAAATACCTA CAAGCAATAT GCTTCAATAC TGAAAAGACA CTTGGGACAA ACTTAAAACA
  AATAATAACA AAGAACACAT CCTAGTTCCA TGTAACCCTC ATGGAAGAAC TGGTCAAAGA
  S
  CATGCAGACA AGCAAAATAG TAAAGGGGAA ACCTCTAGTC AATCAGCGTG CTGCTACCAG
  TCAGCCTATA AGGCAAGGAG GTTCTGAAGG TTCCTGGCTA CTTAGAGACT GAGCAAACCA
  TGTTGGGGGC ACTCTGGCAA GGTCCACCAG TATTCCCAAA AGATGAGTTG GAAAGTGTCT
  GATATTTCAT TACACCATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49602587	NES12889731	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30141307					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602587	NES12889731	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65289722 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr577674	regulatory region 577674			1860 bp distal
Rr577675	regulatory region 577675			1950 bp distal
Ssr3	signal sequence receptor, gamma			Intron
				mRNA-UTR
Tssr33458	transcription start site region 33458			1980 bp upstream
Tssr33459	transcription start site region 33459			1508 bp upstream
Tssr33460	transcription start site region 33460			1353 bp upstream
Tssr33461	transcription start site region 33461			1244 bp upstream
Tssr33462	transcription start site region 33462			1012 bp upstream
Tssr33463	transcription start site region 33463			901 bp upstream