rs30138334 SNP Detail

Summary

• ID
  rs30138334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65299710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCAGTGGC TCCCCCGCCC GGTTCATTAA AGACATCCTA
  GTGTCCAACA GTGGTGAGGA GAAGGGCAGT GTACCAAAAA GAGATTCCGG GCCAGAACCC
  R
  CGCCCGGCTC AGAAGCACGC CGCGAGTGAC TTCCCGAGGA CGCTGCTCCG GACACTAGGC
  CTCCCCGCCG CGCCCGCCAC GTCCCCGCCG CCACCGCCGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss49602550	NES12889383	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30138334					SNP	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602550	NES12889383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65299710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13227	CpG island 13227	within coordinates
Cpgi13228	CpG island 13228	1011 bp proximal
Gm5540	predicted pseudogene 5540	1048 bp upstream
Rr397698	regulatory region 397698	229 bp upstream
Rr577676	regulatory region 577676	169 bp proximal
Rr577677	regulatory region 577677	254 bp proximal
Ssr3	signal sequence receptor, gamma	Intron
Tssr893	transcription start site region 893	1303 bp upstream
Tssr33464	transcription start site region 33464	257 bp downstream
Tssr33465	transcription start site region 33465	290 bp downstream