rs30136949 SNP Detail

Summary

• ID
  rs30136949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38032317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTGTTACT TCTAAGTGTG GGGTTGGACA GGAGCAAAGA
  TGGAGAGTTT GCACACACAC ACACACACAC ACACACACAC ACACCATGGC ATGCATATTT
  Y
  CTAATCTTGT ATCTACCATA GCATTGTAGA AATTGGCATT TTTATAGGTG AAAGTGGTCA
  AATCGTTACA GTTTTAACAG GGATAATAGT TATAACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46917506	NES10809916	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T		T	C	T		C
ss134819109	ENSMUSSNP4585846	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss320714470	CHEV_3_37877090	CHEVERUD	SCREENING_POP	f	SNP							C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30136949					SNP	C	C	C	C	C	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917506	NES10809916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38032317 () rs orientation: forward

Symbol	Name	Function Class
Gm20755	predicted gene, 20755	within coordinates
Rr575600	regulatory region 575600	1098 bp distal
Rr575601	regulatory region 575601	218 bp proximal
Rr575602	regulatory region 575602	1821 bp proximal
Rr575603	regulatory region 575603	1901 bp proximal