rs30136580 SNP Detail

Summary

• ID
  rs30136580
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115809221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGGGCAA TTGGAAATTG
  ATTTATTTAA CATATGAGTG CTCTATCTGC ATGGATGCCT GCATGCCAGA AGATGGCATC
  CGACCACATC ACAGATGGTT GTGAGCCGCC CAGTGGTTGC TGGAAATTGA AAACTCTGGA
  AAGGCACCCA GTGCTCTTAA CCTCTAAATG ATGTCTCTAA CCCAAGTTAG GGCAATTTCA
  W
  CATAGAGCCC CTCAGTCCAT TCAACGTTTT GAAGTTACAG CACAGTTACA GACTCAGGCA
  GTGAGCCAGA TGTTATTGTG CTTCCTAAAG ATTGCCACCA GTGTCCTCAA AATGTTGCCA
  CACAGTGGGA CCGTGAGATG GTTCCGCAAG TAAAAGCCTG GCAACCTGAG CACGGTGCCC
  AGGACTCACA CAGGAGAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46917021	NES10678436	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30136580					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917021	NES10678436	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115809221 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Extl2	exostosin-like glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr583640	regulatory region 583640			465 bp proximal