rs30136375 SNP Detail

Summary

• ID
  rs30136375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64330842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTCACT CTTTTCCTCC
  TCCCCTTCCC CCACACCATA TGTATAATGT ATTAAGTGAC TGACTAAATA TAGTCTCTTC
  AATGTTGGAT CTAAGGAATT AAAAGTTAAA GCATGGGCCA TGGAGCTGAA GTGCTCAGCC
  ATCATCCTTT TTCATACATA CACTGACTAG TGTGAGATGG GACAGTTGCT TTTGGCTCTG
  Y
  GCTCCACTCA CACATCCATG TTTTCCTGTG TAAGTGGAGA TAACATGTGC CCCACAGGCC
  TCTTATGGGA CTTAAATACC GCCTACGCTA TGGTCTCTTC ACCTAGCAGT AAACAGGAGA
  TAAAGACGAA TTGAGTGTGC TAGTCCCCAG CTATCCAAAC CAGGAGAAGG GTCTCCTTCA
  CTGCGCACAT CATGAGCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47417605	NES11041836	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30136375					SNP	C	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47417605	NES11041836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64330842 () rs orientation: forward

Symbol	Name	Function Class
Gm28981	predicted gene 28981	within coordinates
Gm35803	predicted gene, 35803	within coordinates