rs30135894 SNP Detail

Summary

• ID
  rs30135894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72592105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG TTGGTTGGCT TTCTACTTTT
  R
  GTGTTAGTAA CTATGTAACT GAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45899080	mCV24088300	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss133286275	ENSMUSSNP3939359	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321822455	CHEV_6_72565116	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30135894					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72592105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	1016 bp proximal
Gm20536	predicted gene 20536	within coordinates
Gm67593	predicted gene, 67593	1651 bp upstream
Rr399708	regulatory region 399708	1520 bp upstream
Rr632243	regulatory region 632243	86 bp proximal
Rr632244	regulatory region 632244	1161 bp proximal
Rr632245	regulatory region 632245	1614 bp proximal
Rr632246	regulatory region 632246	1706 bp proximal
Rr632247	regulatory region 632247	1868 bp proximal
Tgoln1	trans-golgi network protein	Intron
Tssr57152	transcription start site region 57152	1733 bp upstream
Tssr61478	transcription start site region 61478	1603 bp downstream