rs30135419 SNP Detail

Summary

• ID
  rs30135419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64330489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTACACC GTGACCAGTT
  TTAACACAGC TCCGATGAGC AGTTAACTGT TATTACCACG GAGTCCGAGG AGCAGCCAAC
  TCAGACTGCT CACCCCAAAC AACATAAGCA ATTCCATAGC TTGTTTGTTG CCTTGCAGCA
  CCTCTCAGGC TTTATGTGCA GATCAAGACC TGTACTGCTC GGATCAGTCC AGATCGGGGT
  Y
  GCCTGAAATG GGGTCAGCCT GAACTGAGGA ACATGAGGAA CATCATGATT TGGATTTTGA
  TTGCATTCTA GGGACCTGAC AAATAAAATG CCCAATACTT GATAGGTCCC CCTCCCCCAT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCA CTCTTTTCCT CCTCCCCTTC
  CCCCACACCA TATGTATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47417599	NES11041834	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30135419					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47417599	NES11041834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64330489 () rs orientation: forward

Symbol	Name	Function Class
Gm28981	predicted gene 28981	within coordinates
Gm35803	predicted gene, 35803	within coordinates
Rr412263	regulatory region 412263	1864 bp distal