rs30135416 SNP Detail

Summary

• ID
  rs30135416
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64330266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGAAAA CCCTTCTACC
  CCAAATTGGA AAGCTAGAGG TGTTTTGTTA CAGTGGATCT TTTTTTTTTT TTTTCTTGAT
  GTGTTTGGTT TATACTCTTG AAAGGAAGTG TCACACATGT ACTGTCCCCA CAGGAAATTC
  TGTTCAAGTT AACCCCTTGC TTCCCAGTTC TCCTTCTGTC ATTCATTCCC ACAGAGCCAC
  S
  CTCCTAGACC CTGTTTATAA ACTGTCTACA CCGTGACCAG TTTTAACACA GCTCCGATGA
  GCAGTTAACT GTTATTACCA CGGAGTCCGA GGAGCAGCCA ACTCAGACTG CTCACCCCAA
  ACAACATAAG CAATTCCATA GCTTGTTTGT TGCCTTGCAG CACCTCTCAG GCTTTATGTG
  CAGATCAAGA CCTGTACTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47417596	NES11041833	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30135416					SNP	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47417596	NES11041833	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64330266 () rs orientation: forward

Symbol	Name	Function Class
Gm28981	predicted gene 28981	within coordinates
Gm35803	predicted gene, 35803	within coordinates
Rr412262	regulatory region 412262	1864 bp distal
Rr412263	regulatory region 412263	1641 bp distal