rs30133678 SNP Detail

Summary

• ID
  rs30133678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64329339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATTTGGG GGGGAAAAAT
  CAACTATTTA GGACAAAAGC GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA
  GATAGATAGA TAGATAGAAC AATAAAACTT TCTTGTTGGA TGTGCTGACC CACCGTGTTC
  TCAGAACTTT TCAGAACAGT GAGTACATCC AACTACCCTC TCCCTAGATA GCGCGGCACA
  Y
  GTCCGCTGAC AGCACACAGC ACAGGTCCTA AGTTTCACTT CTTAAATGAC AGGGCAGATG
  GGGCTGATAC AGTGGCTGGA GCATTCAGAC TGATTTGATC CACAGTGGAA TTCAGAAGCC
  CAATGGTCAT ATCCTTCTTG GTGCTGGAGA CCCTTCTGCT CTGCCTAGCT GCCCCTGTCT
  AGAGGACAGG TTATGTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47417578	NES11041823	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30133678					SNP	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47417578	NES11041823	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64329339 () rs orientation: forward

Symbol	Name	Function Class
Gm28981	predicted gene 28981	within coordinates
Gm35803	predicted gene, 35803	within coordinates
Rr412262	regulatory region 412262	937 bp distal
Rr412263	regulatory region 412263	714 bp distal