rs30131641 SNP Detail

Summary

• ID
  rs30131641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115923577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGACAGCA AAGACAGAGA TCACTCAGTA AATAACCACT
  GACTTTTCTT CATTAAGAAA TGCATTTGCA ATTTAAAAAA TAAAAATTGT TCTCTTTCAA
  CAAAAAAAGG AAAATATCCT TTATTTGTTT TTATTGACCC ATTATCATGA GTCACTCTTT
  Y
  AGAATGTGAG TCAGTAGTTC TTATTTTTAT ACTCTTTTAT TCATAAGTGA ATTTTTGACA
  AAAAAAAAAC CTCCCTGAAA TAACTTTCTG AAGTAGTAAA TGAAAGGACG TTGATGCAGA
  ATGAAGGGAA TTATCTTTTC TTTTGTTTGA CAATGCCCCA GCCCTTTGAC CCATTGCTGG
  ATGACAGGAA GTCTTTTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46918431	NES10671995	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30131641					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46918431	NES10671995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115923577 () rs orientation: forward

Symbol	Name	Function Class
D3Mit215	DNA segment, Chr 3, Massachusetts Institute of Technology 215	528 bp proximal
Gm43109	predicted gene 43109	within coordinates
Rr583657	regulatory region 583657	117 bp distal
Tssr35297	transcription start site region 35297	541 bp upstream
Tssr35298	transcription start site region 35298	464 bp upstream
Tssr35299	transcription start site region 35299	304 bp upstream
Vcam1	vascular cell adhesion molecule 1	240 bp upstream