rs30130039 SNP Detail

Summary

• ID
  rs30130039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115809726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATGCAG TTGTAATATA
  GGAAATGGTG CCTGTCTCCA TGTCTGGAGT TCCAGGGAGC ACACGGATGG ACAGCACCGA
  GGGAGAGTTA CAAGAATCGA GTAGACGTTT ATTCACCTGG GCAGAAGGAA GTACGCTATA
  GGTAAAGGGC AAATACAGAT GCGGGCTTGC CCCTTTGTCT CAGTTTGAAC GGTGCTATTT
  R
  CATGCAATAT ACCTAGCCAG GAGCTGCTAG GCTGCTAGGC GATGGGCAGC TGTCTCTCCC
  AGCTCTCATC TTGCACGTCT GTAGACAGAA GGCCCACATT TTGAGTCTTC CTCTGCGTTC
  CACCTTGGGA TGGTGGGGGG AAAAAAGGCC TGGCTGACGA AGGCCTTTTT TTGAGCATCT
  GTAGTCTGTA ATCATCAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46917039	NES10678335	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30130039					SNP	G	G	G	G	A	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46917039	NES10678335	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115809726 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Extl2	exostosin-like glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr583640	regulatory region 583640			within coordinates