rs30129302 SNP Detail

Summary

• ID
  rs30129302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69664924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGTTAAA AAACAAACAA AGAAACCAAA AACGTACTTT
  TGTCTTTATG TGTTTTTCAG GTCAAATCAT ATTAAAGGCA CTCTGAAACC TCTGCCAAAG
  R
  CAGGCACTAC TCTCTGAGGA ACATTTATTT TACCACTATG GCACTTGTCA CAGTGGCCTG
  GAAACCCCAG GTAGATGCTA GGTAGCATAT GGTCCTGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45398872	mCV24613268	ABI	CRAMUS_MOUSE	f	SNP		A
ss50978642	NES13928517	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A	A	A	G	A		A	A	A	G
ss135271410	ENSMUSSNP1609817	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss320793829	CHEV_3_69561513	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30129302					SNP	G	A	A	G	A	A	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978642	NES13928517	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69664924 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	1218 bp downstream
Rr375162	regulatory region 375162	1252 bp downstream
Rr578224	regulatory region 578224	701 bp distal
Rr578225	regulatory region 578225	919 bp distal