rs30129215 SNP Detail

Summary

• ID
  rs30129215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56019696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACTACAA AGAATACCTG
  CAAAAGCACT GGTAAGCAGC ATCCAGGGGG GCCTGAAACA TGGGATTGGA ACTTGTCGGT
  AAGGCCATGT TCTTTATCCC ATTGGTTGAA GGTAGCCTGC TGCTTGGGCT CTCCAGGGAA
  ATGGCTGCCA GCAGGCACGG GTGGGAATCT GGTACGGGAT GGTTCAGATT GAGTAGATTC
  Y
  TTTGTTCCTC ATCACACATT TTGCCGTGGC AATGAAGCCA GATTCCATAA AAAGATAACT
  CCCAATCGGT TTAGCAGTGA CTGTTTGGGA CTCGTGAAGG AATAAACATT TGGCTTATTG
  TCCTTCAGCT CTGCTTTCCT AGAGGCCCAG GTCCTGCAGA CTCCTGATGG CTTATGCTTA
  TTTTCTCGAT AACCTCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45898283	mCV24833525	ABI	CRAMUS_MOUSE	f	SNP		C	T					T	T
ss47922922	NES11661954	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	C	C	T	C	T
ss133220277	ENSMUSSNP3596261	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30129215					SNP	C	C	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922922	NES11661954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56019696 () rs orientation: forward

Symbol	Name	Function Class
Rr631042	regulatory region 631042	1562 bp proximal