rs30128598 SNP Detail

Summary

• ID
  rs30128598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83753229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG GTAAGCTCAG AGTGCCAACA
  W
  GCCTCTTATC TCAAACAAAC TTTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45897784	mCV24606560	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss133350199	ENSMUSSNP2718941	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		A
ss321844801	CHEV_6_83726241	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30128598					SNP	T	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83753229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17617	CpG island 17617	12 bp distal
Gm52907	predicted gene, 52907	within coordinates
Rr632937	regulatory region 632937	1801 bp distal
Rr632938	regulatory region 632938	557 bp distal
Rr632939	regulatory region 632939	352 bp distal
Rr632940	regulatory region 632940	within coordinates
Rr632941	regulatory region 632941	25 bp distal
Tex261	testis expressed gene 261	434 bp upstream
Tssr1911	transcription start site region 1911	306 bp downstream
Tssr57375	transcription start site region 57375	596 bp downstream
Tssr61705	transcription start site region 61705	678 bp upstream
Tssr61706	transcription start site region 61706	667 bp upstream
Tssr61707	transcription start site region 61707	650 bp upstream
Tssr61708	transcription start site region 61708	632 bp upstream
Tssr61709	transcription start site region 61709	571 bp upstream
Tssr61710	transcription start site region 61710	488 bp upstream
Tssr61711	transcription start site region 61711	421 bp upstream