rs30128108 SNP Detail

Summary

• ID
  rs30128108
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23441325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTCAACC CATGTAGGAA
  ACTAAACAAA TACCCAACAT TAACAAATAA TTTGCTTTCT GATTTTTTGA CTCTAATTTA
  AATTGACATT TTTGCCTCAG ATTTTCATGT TTATACGAGT CTTTGAAAAG TCTTTTCACC
  TCAGTGGCTC CTCGAGTGCT CACTTGGAAC AATGACTTTG CAGCTGGCCA AACCTGACTC
  K
  CAATCAATTT TTATGAGTAC AAATTCTTGG GCTGATGGCT AGGTTTCCAG CTGTATCACT
  CACATAATCC ACACTCACAC GTGGTGATGA GATTCACATT ATCACCAGAG CACCATTGTG
  CCGATGGCAG CAGCAGACAC AGCAGGGTAT ACTGTCCTCC CTAGGAAAAA TGTCTCCTTC
  ACCTTTCAAT AATGCAGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45897877	mCV27552238	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		G
ss60871211	NES15986340	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	G		T	G	G	G		T		G	T	T		G
ss133073452	ENSMUSSNP685183	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							G					T
ss321768450	CHEV_6_23391326	CHEVERUD	SCREENING_POP	f	SNP													T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30128108					SNP	G	G	T	T	T	T	G	G	T	G	G	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60871211	NES15986340	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23441325 () rs orientation: forward

Symbol	Name	Function Class
Cadps2	Ca2+-dependent activator protein for secretion 2	Intron
Rr627175	regulatory region 627175	924 bp distal