rs30125660 SNP Detail

Summary

• ID
  rs30125660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:56021798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATAGAA AAGATCCATC
  CATCAGGAGC ATGGAGTTGG AAGTGCTCTA TTGTCTTGGG CAGAATCTTA AGATCTGACT
  TTAGAATTTT CATTGGTAAA GGTAACTTAG TCCATAAGGT TATGTCAAGA TAAAAAACTA
  GTAGGCATCC CAGCATTATC CACTTTCTTT TGTTCTTGGA TTGGGGTGAG TGGTTCTGTC
  Y
  CAAAGGACAC ATACATATTT ATGAGATAAA CTGACTTATG ATGTCTAATT TGTTAGCTCT
  CAAATGCATG GAGATTGAGT GTCTCCTTGT TCTCGCCTAA TGGCTCCTTT CCAATTACCT
  GCATCACATC TGAGCCCCAT GACCAAAGCA GTGGCTATGG GCAAAGAGCC ACTCATTGAT
  TAGGGATTTA CAGAACATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45898153	mCV24833535	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss47922940	NES11661896	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	C	T
ss133220316	ENSMUSSNP479862	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30125660					SNP	C	C	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922940	NES11661896	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56021798 () rs orientation: forward

Symbol	Name	Function Class
Rr631042	regulatory region 631042	within coordinates