rs30125462 SNP Detail

Summary

• ID
  rs30125462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:121069084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG ACCTGACCCA GGAGTTCTAA
  R
  TCTGAGGTCC AGCAGCAGCA TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46374368	mCV24890761	ABI	CRAMUS_MOUSE	f	SNP		G	A		A
ss61237522	NES16854904	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	G		A	G	G	G
ss137064565	ENSMUSSNP2553752	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss323230733	CHEV_9_121149136	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30125462					SNP	G	G	A	G	A	A	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61237522	NES16854904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121069084 () rs orientation: forward

Symbol	Name	Function Class
Rr688903	regulatory region 688903	1564 bp distal
Rr688904	regulatory region 688904	326 bp proximal
Rr688905	regulatory region 688905	450 bp proximal
Rr688906	regulatory region 688906	1873 bp proximal
Ulk4	unc-51-like kinase 4	Intron