rs30123706 SNP Detail

Summary

• ID
  rs30123706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108042209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT AAACCTTTCC AGGTAGAGGC
  R
  GGGCTAAGTG GCTGAAAGGG CTGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45898287	mCV24060766	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss133494220	ENSMUSSNP1170418	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss321891477	CHEV_6_108015242	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30123706					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108042209 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	266 bp upstream
Rr399804	regulatory region 399804	55 bp downstream
Rr399805	regulatory region 399805	within coordinates
Rr399806	regulatory region 399806	471 bp upstream
Rr636028	regulatory region 636028	277 bp distal
Rr636029	regulatory region 636029	193 bp distal
Rr636030	regulatory region 636030	50 bp proximal
Rr636031	regulatory region 636031	555 bp proximal
Setmar	SET domain without mariner transposase fusion	Intron
Tssr58052	transcription start site region 58052	195 bp downstream