rs30122607 SNP Detail

Summary

• ID
  rs30122607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17751884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTTTTCC TCTCTCCAGT TCTTGCATAC ATACTCTTTG
  TTGCTCTCCT TCAAATTTAT GGCCTCTTCT TCCATTAACT GTTGTTAACA TGCATCTGTG
  Y
  ATGGTTGTGA CATATCTATT CCTAAGTACC TACATACAAC CTGCTCCATC TGCATAACGT
  TACTTGTATG TTTTCAGGGC TGACCCCTTG GTACTGGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45896950	mCV22806940	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss321756218	CHEV_6_17701885	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30122607					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17751884 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626854	regulatory region 626854			1055 bp distal
Rr626855	regulatory region 626855			204 bp distal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant