rs30121438 SNP Detail

Summary

• ID
  rs30121438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72592454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCA CAGGCAGATG AGTGACAGAT
  R
  GCTGTCCATG AACAAAGAAC TTAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45895864	mCV24088301	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss51695121	NES14819725	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G		G	G	A	A		A	A	A	A		G
ss321822456	CHEV_6_72565465	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30121438					SNP	A	A	A	A	A	A	G	A	G	G	A	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695121	NES14819725	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72592454 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	667 bp proximal
Gm20536	predicted gene 20536	within coordinates
Gm67593	predicted gene, 67593	1302 bp upstream
Rr399708	regulatory region 399708	1171 bp upstream
Rr632243	regulatory region 632243	within coordinates
Rr632244	regulatory region 632244	812 bp proximal
Rr632245	regulatory region 632245	1265 bp proximal
Rr632246	regulatory region 632246	1357 bp proximal
Rr632247	regulatory region 632247	1519 bp proximal
Tgoln1	trans-golgi network protein	Intron
Tssr57152	transcription start site region 57152	1384 bp upstream
Tssr61478	transcription start site region 61478	1254 bp downstream