rs30120954 SNP Detail

Summary

• ID
  rs30120954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50577025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAGAGA AGGGTTCCCA
  AGAAGAGACA GAATCCCACC AGCAGATCGA GTCCTACCTC AGAGCGCTTT TCAGAAAGTT
  CCAGAAAAGG AATCTTCCTA CTGATACTAA AGGGTCAGTC ACAGCTATTA TTAAGTTCCT
  GTTGCAGCGA GAGTACGTGA AGGCGAACGA TGCTTACCTT TAGATGGCCA CTGGAAATGC
  Y
  CCCTGGCCTA TTGGTGTCAC TATGGTTGGT ATCCATGCCA GAACTGGCAG GGAAAAGATC
  TTTTCCAAGC ATGTTGCACA TGTTTTAAAT GATGAAACGC AACGGAATTA CATTCAGGGG
  CTCAAGAGGC TAATGACAAT TTGCCAGAAG CACTTTCCCA CAGACCCATG GAAATGTGTG
  GAGTATAATG TGCTGTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45896549	mCV24540449	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss133182402	ENSMUSSNP6372847	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30120954					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50577025 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	1513 bp downstream
Gm44054	predicted gene, 44054	within coordinates
Rr630048	regulatory region 630048	1095 bp distal
Rr630049	regulatory region 630049	1655 bp proximal
Rr630050	regulatory region 630050	1750 bp proximal