rs30120745 SNP Detail

Summary

• ID
  rs30120745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119454270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA TGACTTTCCA CTGGGAACTC
  R
  TCTCTGATCC TGGAAGTAGC ACTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45895468	mCV24874550	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss48076037	NES11870424	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A		A	G	G	A		A	G		A
ss133589805	ENSMUSSNP5927389	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss321928119	CHEV_6_119427327	CHEVERUD	SCREENING_POP	f	SNP													A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30120745					SNP	G	G	A	G	A	A	A	A	A	G	G	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076037	NES11870424	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119454270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	1559 bp proximal
Rr637690	regulatory region 637690	347 bp proximal
Rr637691	regulatory region 637691	1869 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron