rs30120630 SNP Detail

Summary

• ID
  rs30120630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17747735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCTCTAT CCACATTTTC
  AACTCATTTG TTTTCCTTTT ATTTCATTTG AACTTTTAAA ATGTTAGATA ATTTTTAGCA
  ATTATTTGTT TTTTTTTCCT TTTCAAGAGG TGGTACAGTA GACAGACCAA CAGCTTGGCT
  TCGGAGCCAG ACCTCCTGGA TTTGATTCTC AGCACAATAC TCATGACTTA CACCATCTTG
  R
  CAAATGAACT CGTGAATGTA GGTGCTAGCA GCGTCTCCTC GTGCAGTCGG TATGAAGATT
  AAATGGATGG ACACATATAG ACGTCCAAAA TAGTGCCTGA CACATAGTAA GCAAAGAAAC
  ATTGCGTAAT TCTTTTCTGC AACACCAGCT TCGTTCACAC TTACTCTTCA TAGTCGTCCA
  TAATGGCTTA GCGGTTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45896354	mCV22807002	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss133021944	ENSMUSSNP6055018	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30120630					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17747735 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42852	predicted gene 42852			within coordinates
Rr626852	regulatory region 626852			within coordinates
Rr626853	regulatory region 626853			944 bp proximal
Rr626854	regulatory region 626854			1491 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr1786	transcription start site region 1786			1352 bp upstream
Tssr55095	transcription start site region 55095			1267 bp upstream
Tssr55096	transcription start site region 55096			1404 bp upstream
Tssr55097	transcription start site region 55097			1436 bp upstream
Tssr55098	transcription start site region 55098			1832 bp upstream