rs30119361 SNP Detail

Summary

• ID
  rs30119361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108815240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG CTCTCATGTA CTTCATGGCA
  Y
  AGCACCACAG AGCATGGGTT CCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45897502	mCV24063853	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss51808883	NES14771199	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	T	T	C		T	C	T	T		C
ss133510240	ENSMUSSNP6836578	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss321894215	CHEV_6_108788273	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30119361					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51808883	NES14771199	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108815240 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368140	regulatory region 368140			1905 bp downstream
Rr368141	regulatory region 368141			1302 bp upstream
Rr636220	regulatory region 636220			1407 bp distal
Rr636221	regulatory region 636221			within coordinates
Rr636222	regulatory region 636222			1040 bp proximal
Tssr58111	transcription start site region 58111			1965 bp downstream
Tssr58112	transcription start site region 58112			1942 bp downstream
Tssr58113	transcription start site region 58113			1923 bp downstream
Tssr58114	transcription start site region 58114			1909 bp downstream
Tssr58115	transcription start site region 58115			1872 bp downstream
Tssr58116	transcription start site region 58116			1646 bp downstream
Tssr58117	transcription start site region 58117			1627 bp downstream
Tssr58118	transcription start site region 58118			1581 bp downstream
Tssr58119	transcription start site region 58119			1540 bp downstream
Tssr58120	transcription start site region 58120			934 bp upstream