rs30119076 SNP Detail

Summary

• ID
  rs30119076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:107509893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTGGCATGC TGTTTCCCAT ATTTTCTGAA GTTGTTATTA TAATTATTAT ACTCTTGTCC
  AGTGCCCTTT ATCTTTAAAG CCACCTACTT CACATTGGAA AAAAAAATGA ATCGAGTCCA
  AGCTGAGTGA GAAGTGTTAT CTTATGGCTT GGTGCATTTG GTGTCTAGAA GCTATGCAGA
  AGTCAGAAAG TAGCATTGGT GTGCTGAGCT CTTCTGGGAC TTTCAAACTT GGCGTTGTTG
  TCCTCACGAT GGAATTGAGG CATGACTAAA ATAAGAGAGA GAGAGTGATA GAGAGAGAGA
  R
  AGAAAGAGGG AGAGAGAGAG AGACATGGCT TTTCTGAGCC CACATGCCCC TTTGTTGTAA
  AAATTATCAC AGGATAGTTT TGAAATCAAA CTAAGATGGC ACAATATCAC ATCTTTGAAC
  TGTCAAACCA TTGGCCTCCC TGGGCGAGAT CTTTATTGCA CAAGTCTCAT GCAGGAAAGA
  CTGAGTGAAC ATTCCTTTGT AAATAAAAGC AGTAAGGTGC TTATTAGAAA AGATTACTCT
  GTTAAATAAA AGAAACACAA GCCAGAGCCA ACCACAGGAG GTAGTTCTAA CAAAATTGTC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45896810	mCV23133299	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss133484723	ENSMUSSNP5422071	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30119076					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:107509893 () rs orientation: forward

Symbol	Name	Function Class
Lrrn1	leucine rich repeat protein 1, neuronal	Intron
Rr636001	regulatory region 636001	943 bp distal
Rr636003	regulatory region 636003	1565 bp proximal