rs30118907 SNP Detail

Summary

• ID
  rs30118907
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68191598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCTAAA TGCTGGAATT TAGAATTCAG AATTTAGAAT
  CCACAAGGTT CACATTCTAT GAAGGAAAAT GTTCTCTTTT ACCTTAAACC ATAAATTCAA
  M
  GTTCATTCAA GGAGAAAAGT CAGAAATAAT AAAGTTTAAA GGAACTGTGA ACTTGCTCTG
  AAATATGTAG AGCCATGTTC TCAAGGCTGA CACTTTGCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45398455	mCV24617311	ABI	CRAMUS_MOUSE	f	SNP		C	C					A		C
ss50976042	NES13930607	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	A	C		A	C	A	C		A	A	C	A		C
ss135262185	ENSMUSSNP2757480	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320791294	CHEV_3_68088187	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30118907					SNP	C	C	C	C	C	A	C	A	A	C	A	C	C	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50976042	NES13930607	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68191598 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577989	regulatory region 577989	261 bp distal
Schip1	schwannomin interacting protein 1	Intron
Tssr29454	transcription start site region 29454	2000 bp downstream