rs30117736 SNP Detail

Summary

• ID
  rs30117736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56882260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCATTT TGTGCCACTA
  TAGGCACTCA ATCATGTACC CACACTTGTA CTACTGCAGG CAATCATGTA CACACATCTG
  TGCCACTGCA GGCAATCATG TACACACACC TGTGCCACTG CAGGCAATCA TGTACACACA
  CCTGTGCCAC TGCAGGCAAT CAATCATGAA CACACACCTG TGTCGCTATA GGCAATTACA
  Y
  ATATATATGC TTACATTAGA GTGCTTGAAA AATATATTCC TAAGACTGCT TGCCTCGTCA
  GAGGGCTCAA CAGATATAAA GCCTGACAAC ACAAGTTCCA TCCCTGAGAC TCAAAACAAA
  ACAAATCAAA TCCCAAATCT CACAGTTGTT CTCTGATCTC CACACCATGA CAAGTGCTTG
  TGGCCACTCA AACACACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45896119	mCV23495516	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs30117736					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56882260 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm3793	predicted gene 3793			636 bp downstream
Gm53332	predicted gene, 53332			within coordinates
Nt5c3	5'-nucleotidase, cytosolic III			Intron
				Noncoding-Transcript-Variant
Rr631119	regulatory region 631119			1785 bp distal
Rr631120	regulatory region 631120			659 bp distal
Rr631121	regulatory region 631121			within coordinates
Rr631122	regulatory region 631122			916 bp proximal