rs30116556 SNP Detail

Summary

• ID
  rs30116556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95494520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTTTGT TCCCAACACA
  CTCATCTGGC AGCTCACAAC TCCCTTCTAT CCCAGCTTTA GAGAATCAAG TGCCACACTC
  TGGCATCTAA GGGAACCTGC ATTCATGTAC TCTACCCACA CACAGGGAAA CAAACATATA
  CACACATTTT TTTTAATTTT AAACTGTAAA AAAATTAAAG TCTCACCGAG CGTGGTGGCT
  Y
  ACGCCTTTAA TCCCAGCACT TGGGAGGCAG AGGCAGGCGG ATTTTTGAGT TCGAGGCCAG
  CCTGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTATA TAGAGAAACC CTGTCTTGAA
  CCCCACCCCC AAAAAATTAA AGTCTCTTAC GTAGTTGTTT TCTTTTAACA GGTCCTTCAC
  GTCTTGGAAT CTAGTCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45397342	mCV23591603	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30116556					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95494520 () rs orientation: forward

Symbol	Name	Function Class
Gm40097	predicted gene, 40097	within coordinates
Gm42671	predicted gene 42671	1762 bp upstream
Golph3l	golgi phosphoprotein 3-like	1760 bp upstream
Hormad1	HORMA domain containing 1	Intron
Rr397841	regulatory region 397841	1384 bp upstream
Rr580975	regulatory region 580975	732 bp proximal
Rr580976	regulatory region 580976	1050 bp proximal
Rr580977	regulatory region 580977	1593 bp proximal
Rr580978	regulatory region 580978	1599 bp proximal
Rr580979	regulatory region 580979	1792 bp proximal
Tssr30603	transcription start site region 30603	1719 bp upstream
Tssr30604	transcription start site region 30604	1751 bp upstream
Tssr30605	transcription start site region 30605	1782 bp upstream
Tssr30606	transcription start site region 30606	1826 bp upstream