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rs30116556 SNP Detail
Summary
  • ID
    rs30116556
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:95494520 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGAGTTTTGT TCCCAACACA
    CTCATCTGGC AGCTCACAAC TCCCTTCTAT CCCAGCTTTA GAGAATCAAG TGCCACACTC
    TGGCATCTAA GGGAACCTGC ATTCATGTAC TCTACCCACA CACAGGGAAA CAAACATATA
    CACACATTTT TTTTAATTTT AAACTGTAAA AAAATTAAAG TCTCACCGAG CGTGGTGGCT
    Y
    ACGCCTTTAA TCCCAGCACT TGGGAGGCAG AGGCAGGCGG ATTTTTGAGT TCGAGGCCAG
    CCTGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTATA TAGAGAAACC CTGTCTTGAA
    CCCCACCCCC AAAAAATTAA AGTCTCTTAC GTAGTTGTTT TCTTTTAACA GGTCCTTCAC
    GTCTTGGAAT CTAGTCAAGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
ss45397342 mCV23591603 ABI CRAMUS_MOUSE f SNP T C C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
rs30116556 SNP T C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:95494520 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm40097 predicted gene, 40097 within coordinates
Gm42671 predicted gene 42671 1762 bp upstream
Golph3l golgi phosphoprotein 3-like 1760 bp upstream
Hormad1 HORMA domain containing 1 Intron
Rr397841 regulatory region 397841 1384 bp upstream
Rr580975 regulatory region 580975 732 bp proximal
Rr580976 regulatory region 580976 1050 bp proximal
Rr580977 regulatory region 580977 1593 bp proximal
Rr580978 regulatory region 580978 1599 bp proximal
Rr580979 regulatory region 580979 1792 bp proximal
Tssr30603 transcription start site region 30603 1719 bp upstream
Tssr30604 transcription start site region 30604 1751 bp upstream
Tssr30605 transcription start site region 30605 1782 bp upstream
Tssr30606 transcription start site region 30606 1826 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory