AGAGTTTTGT TCCCAACACA CTCATCTGGC AGCTCACAAC TCCCTTCTAT CCCAGCTTTA GAGAATCAAG TGCCACACTC TGGCATCTAA GGGAACCTGC ATTCATGTAC TCTACCCACA CACAGGGAAA CAAACATATA CACACATTTT TTTTAATTTT AAACTGTAAA AAAATTAAAG TCTCACCGAG CGTGGTGGCT Y ACGCCTTTAA TCCCAGCACT TGGGAGGCAG AGGCAGGCGG ATTTTTGAGT TCGAGGCCAG CCTGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTATA TAGAGAAACC CTGTCTTGAA CCCCACCCCC AAAAAATTAA AGTCTCTTAC GTAGTTGTTT TCTTTTAACA GGTCCTTCAC GTCTTGGAAT CTAGTCAAGA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
C57BL/6J |
---|---|---|---|---|---|---|---|---|
ss45397342 | mCV23591603 | ABI | CRAMUS_MOUSE | f | SNP | T | C | C |
SNP Consensus Information | ||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
C57BL/6J |
||||
rs30116556 | SNP | T | C | C |
Location: Chr3:95494520 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm40097 | predicted gene, 40097 | within coordinates | ||||||
Gm42671 | predicted gene 42671 | 1762 bp upstream | ||||||
Golph3l | golgi phosphoprotein 3-like | 1760 bp upstream | ||||||
Hormad1 | HORMA domain containing 1 | Intron | ||||||
Rr397841 | regulatory region 397841 | 1384 bp upstream | ||||||
Rr580975 | regulatory region 580975 | 732 bp proximal | ||||||
Rr580976 | regulatory region 580976 | 1050 bp proximal | ||||||
Rr580977 | regulatory region 580977 | 1593 bp proximal | ||||||
Rr580978 | regulatory region 580978 | 1599 bp proximal | ||||||
Rr580979 | regulatory region 580979 | 1792 bp proximal | ||||||
Tssr30603 | transcription start site region 30603 | 1719 bp upstream | ||||||
Tssr30604 | transcription start site region 30604 | 1751 bp upstream | ||||||
Tssr30605 | transcription start site region 30605 | 1782 bp upstream | ||||||
Tssr30606 | transcription start site region 30606 | 1826 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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