rs30116338 SNP Detail

Summary

• ID
  rs30116338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108042484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC TACAAGACTC CTCTTAATTC
  Y
  CACCAAGGGG AGCCTGCACC CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45895811	mCV24061036	ABI	CRAMUS_MOUSE	f	SNP	C			T		C
ss51821987	NES14764686	PERLEGEN	MM_PANEL2	f	SNP		C	C		C	C	T	T		C		T		C
ss133494229	ENSMUSSNP7210150	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					C					C
ss321891479	CHEV_6_108015517	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30116338					SNP	C	C	C	T	C	C	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51821987	NES14764686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108042484 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	541 bp upstream
Rr399804	regulatory region 399804	330 bp downstream
Rr399805	regulatory region 399805	23 bp downstream
Rr399806	regulatory region 399806	196 bp upstream
Rr636028	regulatory region 636028	552 bp distal
Rr636029	regulatory region 636029	468 bp distal
Rr636030	regulatory region 636030	204 bp distal
Rr636031	regulatory region 636031	280 bp proximal
Setmar	SET domain without mariner transposase fusion	Intron
Tssr58052	transcription start site region 58052	470 bp downstream