rs30115901 SNP Detail

Summary

• ID
  rs30115901
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57520364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTAAGT ATGGATATGG
  AGGACACAAT TTGGTAAAAC TTTTACTCTT AACTACTGTG TAATATTTAG ATAAAACTTA
  AGCGAAAACA AAGCATTTAA GTTTTGGTCA AACATTTTTG TTCTTTAGTC GGGCCTTATA
  GATATTATGA AGAGTAGAAC AAGAACTCTA TTGATTTAAG CAGTGGTTTC ACATCAGGGT
  M
  CTGGACTTTT ACCTTTCACA CACCTAATAT AACTTTCTGA TACTCTTATT ACTTGCTTTA
  TAGCTTTCTT GTTCACCTTA GAAAAATATC CAAAATGGAT GTATCTGGAG GATATCATCC
  TTAGTGAGGT AACCCAATCA CAAAAGAACA CACATGATAA GCACTCAATG ATAAGTGGAT
  ATTAACCCAG AAACTTAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss45896403	mCV25134773	ABI	CRAMUS_MOUSE	f	SNP	C	A		A
ss51315061	NES13763375	PERLEGEN	MM_PANEL2	f	SNP		A	A		A	C	C	C
ss133241516	ENSMUSSNP3616641	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30115901					SNP	C	A	A	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51315061	NES13763375	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57520364 () rs orientation: forward

Symbol	Name	Function Class
Gm45193	predicted gene 45193	within coordinates
Gm66279	predicted gene, 66279	within coordinates
Rr379418	regulatory region 379418	1055 bp downstream
Rr631143	regulatory region 631143	1948 bp distal
Rr631144	regulatory region 631144	284 bp proximal
Rr631145	regulatory region 631145	1265 bp proximal