rs30115809 SNP Detail

Summary

• ID
  rs30115809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114660895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG TGCAGCTGTG TTTCTTGGTG
  R
  GGTCTTCATG GGAGCCTGTG GGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45896300	mCV22284870	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss133571426	ENSMUSSNP1552548	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30115809					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114660895 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Rr636807	regulatory region 636807			1298 bp distal
Rr636808	regulatory region 636808			58 bp distal